STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknDSerine/threonine-protein kinase; Together with the serine/threonine kinase Pkn1, may play a role in the specific interactions with host proteins during intracellular growth. (930 aa)    
Predicted Functional Partners:
CCA_00399
Serine/threonine protein phosphatase, putative; Similar to GP:8978769; identified by sequence similarity; putative.
 
 0.909
pkn1
Protein kinase, putative; Together with the serine/threonine kinase PknD, may play a role in the specific interactions with host proteins during intracellular growth.
  
 0.886
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
  
    0.762
CCA_00030
FHA domain protein; Identified by match to PFAM protein family HMM PF04203.
 
 
 
 0.700
CCA_00679
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.697
atpK
ATP synthase, subunit K; Similar to GP:7190617; identified by sequence similarity; putative.
       0.688
rsbV_1
Anti-anti-sigma factor; Similar to GB:M63957, SP:P30720, PID:151242, and PID:999193; identified by sequence similarity; putative; Belongs to the anti-sigma-factor antagonist family.
      
 0.501
atpI
V-type sodium ATP synthase, subunit I; Similar to GB:X76908, and PID:488737; identified by sequence similarity; putative.
       0.461
atpD
V-type ATPase, subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.461
atpB
ATP synthase, subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
       0.461
Your Current Organism:
Chlamydia caviae
NCBI taxonomy Id: 227941
Other names: C. caviae GPIC, Chlamydia caviae GPIC, Chlamydophila caviae GPIC, Chlamydophila caviae str. GPIC
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