STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_5215Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein. (129 aa)    
Predicted Functional Partners:
RMCC_5214
Uncharacterized protein, MTH1187 family.
       0.774
RMCC_3260
Pyridoxamine 5'-phosphate oxidase.
  
     0.734
RMCC_3342
Deazaflavin-dependent nitroreductase family protein.
  
   
 0.631
RMCC_4768
F420-dependent glucose-6-phosphate dehydrogenase.
  
   
 0.623
RMCC_5944
F420-0--gamma-glutamyl ligase.
 
  
 0.576
RMCC_0909
Luciferase-like oxidoreductase.
  
   
 0.541
RMCC_5200
Uncharacterized protein.
  
   
 0.536
RMCC_1609
Deazaflavin-dependent nitroreductase family protein.
  
   
 0.534
RMCC_2830
Oxidoreductase.
  
     0.525
RMCC_5419
Deazaflavin-dependent nitroreductase family protein.
  
   
 0.517
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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