STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_0014Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (202 aa)    
Predicted Functional Partners:
HNE_3135
Conserved hypothetical protein; Identified by similarity to GB:AAL94753.1.
  
 
   0.599
HNE_2707
Putative lipoprotein; Identified by similarity to GB:CAB45042.1.
  
     0.555
HNE_0015
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.524
HNE_0838
Conserved hypothetical protein; Identified by similarity to GB:CAG76557.1; match to protein family HMM PF03235; match to protein family HMM PF07510.
  
     0.470
HNE_2130
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.443
HNE_2965
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.437
HNE_2688
Conserved hypothetical protein.
  
    0.435
HNE_2596
Putative lipoprotein.
  
     0.422
HNE_2630
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 
 0.401
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.