STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_0203Conserved hypothetical protein; Identified by similarity to GB:AAK25564.1. (225 aa)    
Predicted Functional Partners:
HNE_0204
Identified by match to protein family HMM PF03968.
 
   
 0.885
HNE_3195
Putative O-antigen polymerase; Identified by match to protein family HMM PF04932.
  
     0.762
HNE_2068
Conserved hypothetical protein.
  
     0.756
HNE_2262
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.754
HNE_0851
Putative lipoprotein; Identified by similarity to GB:AAK22684.1.
  
     0.746
HNE_2626
Conserved hypothetical protein.
  
     0.731
HNE_2714
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.726
lptD
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
   
 0.713
HNE_1159
Identified by match to protein family HMM PF04355.
  
     0.684
HNE_2106
Toluene tolerance protein, Ttg2 family; Identified by match to protein family HMM PF05494.
  
     0.684
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.