STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_0567Identified by match to protein family HMM PF03109. (454 aa)    
Predicted Functional Partners:
HNE_0568
PAP2 domain protein; Identified by match to protein family HMM PF01569.
 
     0.804
HNE_1388
Conserved hypothetical protein.
 
     0.773
HNE_0821
Conserved hypothetical protein.
 
  
 0.510
HNE_0566
enoyl-CoA hydratase; Identified by similarity to SP:P14604; match to protein family HMM PF00378.
       0.463
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
    0.445
HNE_0399
Putative tyrosine kinase DivL; Identified by similarity to SP:Q9RQQ9; match to protein family HMM PF00512; match to protein family HMM PF02518.
     
 0.427
HNE_3161
rpsU-divergently transcribed protein; Identified by match to protein family HMM TIGR02396.
  
 
 0.426
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.