STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_1246Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF00486. (874 aa)    
Predicted Functional Partners:
HNE_1495
ECF sigma factor family protein; Identified by match to protein family HMM PF07638; match to protein family HMM TIGR02937.
 
 
 
 0.729
HNE_1632
ECF sigma factor family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF07638; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.720
HNE_2237
Carbohydrate kinase, FGGY family; Identified by match to protein family HMM PF00069; match to protein family HMM PF00481.
 
 0.709
HNE_2143
ECF sigma factor family protein; Identified by match to protein family HMM PF07638; match to protein family HMM TIGR02937.
 
 
 
 0.678
HNE_1635
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.569
HNE_1119
Conserved hypothetical protein; Identified by similarity to GB:CAH34042.1.
  
     0.547
HNE_0966
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.515
HNE_0582
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
     
 0.509
HNE_1508
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
   
 
 0.508
HNE_1620
Conserved hypothetical protein; Identified by similarity to PIR:F82984.
  
     0.466
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.