HNE_1481 protein (Hyphomonas neptunium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HNE_1481

Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713. (192 aa)

Predicted Functional Partners:

HNE_1381

0.751

HNE_1488

0.540

HNE_1483

0.526

HNE_1480

0.518

HNE_1482

0.436

HNE_1485

0.425

Your Current Organism:

Hyphomonas neptunium

NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
HNE_1381	HNE_1481	Putative membrane protein.	Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713.	0.751
HNE_1480	HNE_1481	Hypothetical protein; Identified by Glimmer2; putative.	Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713.	0.518
HNE_1481	HNE_1381	Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713.	Putative membrane protein.	0.751
HNE_1481	HNE_1480	Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713.	Hypothetical protein; Identified by Glimmer2; putative.	0.518
HNE_1481	HNE_1482	Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713.	Conserved hypothetical protein; Identified by similarity to GB:CAI09940.1.	0.436
HNE_1481	HNE_1483	Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713.	Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	0.526
HNE_1481	HNE_1485	Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713.	Copper-resistance protein, CopA family; Identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480.	0.425
HNE_1481	HNE_1488	Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713.	Hypothetical protein; Identified by Glimmer2; putative.	0.540
HNE_1482	HNE_1481	Conserved hypothetical protein; Identified by similarity to GB:CAI09940.1.	Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713.	0.436
HNE_1482	HNE_1483	Conserved hypothetical protein; Identified by similarity to GB:CAI09940.1.	Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	0.423
HNE_1483	HNE_1481	Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713.	0.526
HNE_1483	HNE_1482	Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	Conserved hypothetical protein; Identified by similarity to GB:CAI09940.1.	0.423
HNE_1483	HNE_1485	Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	Copper-resistance protein, CopA family; Identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480.	0.795
HNE_1485	HNE_1481	Copper-resistance protein, CopA family; Identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480.	Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713.	0.425
HNE_1485	HNE_1483	Copper-resistance protein, CopA family; Identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480.	Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	0.795
HNE_1488	HNE_1481	Hypothetical protein; Identified by Glimmer2; putative.	Conserved domain protein; Identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713.	0.540

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2024

Credits

Access

Info

About