STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_1495ECF sigma factor family protein; Identified by match to protein family HMM PF07638; match to protein family HMM TIGR02937. (188 aa)    
Predicted Functional Partners:
HNE_1496
Serine/threonine protein kinase; Identified by match to protein family HMM PF00069.
 
 
 
 0.891
HNE_1631
Protein kinase; Identified by match to protein family HMM PF00069.
 
 
 
 0.789
HNE_2144
Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07721.
 
 
 
 0.787
HNE_1246
Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF00486.
 
 
 
 0.729
HNE_2906
Peptidase, M56 family; Identified by match to protein family HMM PF05569.
  
     0.616
HNE_0094
Putative lipoprotein; Identified by similarity to GB:AAM41903.1.
  
 
 0.492
HNE_2090
Peptidase, family M28; Identified by match to protein family HMM PF01546; match to protein family HMM PF04389.
  
     0.465
HNE_1636
Protein kinase; Identified by match to protein family HMM PF00069.
 
 
 
 0.453
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.425
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.410
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.