STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_2531Identified by match to protein family HMM PF02195; match to protein family HMM PF07506. (304 aa)    
Predicted Functional Partners:
HNE_2530
Identified by match to protein family HMM PF02195; match to protein family HMM PF07506.
     0.978
HNE_2529
Site-specific recombinase, resolvase family; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
 
     0.948
HNE_2528
Conserved hypothetical protein; Identified by similarity to GB:BAC46141.1.
       0.588
gidB
Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.536
HNE_0708
Nucleotide binding protein; Identified by match to protein family HMM PF01656.
  
 
 0.512
HNE_1128
Conserved hypothetical protein; Identified by similarity to GB:AAK24136.1.
  
 
 0.512
HNE_1300
CobQ/CobB/MinD/ParA nucleotide binding domain; Identified by match to protein family HMM PF01656.
  
 
 0.512
parA
Chromosome partitioning protein ParA; Identified by similarity to SP:O05189; match to protein family HMM PF01656.
  
 
 0.512
HNE_2527
Hypothetical protein; Identified by Glimmer2; putative.
       0.432
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.425
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.