STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NE1097TonB-dependent receptor protein. (824 aa)    
Predicted Functional Partners:
NE1083
Hypothetical protein.
  
    0.796
NE1098
Putative transmembrane sensor.
 
    0.693
NE1099
Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.673
NE1095
Possible TonB-dependent receptor; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.980) with cleavage site probability 0.732 at residue 24.
 
    0.639
NE1096
Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.607
NE0354
Possible TonB protein.
   
   0.549
NE1626
Putative TonB protein.
   
   0.549
NE1102
Putative transmembrane sensor.
 
    0.522
NE0550
Conserved hypothetical protein; COGs COG3182.
 
    0.465
NE1531
TonB-dependent receptor protein.
  
     0.456
Your Current Organism:
Nitrosomonas europaea
NCBI taxonomy Id: 228410
Other names: N. europaea ATCC 19718, Nitrosomonas europaea ATCC 19718, Nitrosomonas europaea str. ATCC 19718
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