Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
NE0354 | NE1097 | Possible TonB protein. | TonB-dependent receptor protein. | 0.549 |
NE0354 | NE1531 | Possible TonB protein. | TonB-dependent receptor protein. | 0.549 |
NE0550 | NE1095 | Conserved hypothetical protein; COGs COG3182. | Possible TonB-dependent receptor; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.980) with cleavage site probability 0.732 at residue 24. | 0.406 |
NE0550 | NE1097 | Conserved hypothetical protein; COGs COG3182. | TonB-dependent receptor protein. | 0.465 |
NE1083 | NE1097 | Hypothetical protein. | TonB-dependent receptor protein. | 0.796 |
NE1083 | NE1098 | Hypothetical protein. | Putative transmembrane sensor. | 0.426 |
NE1083 | NE1102 | Hypothetical protein. | Putative transmembrane sensor. | 0.409 |
NE1095 | NE0550 | Possible TonB-dependent receptor; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.980) with cleavage site probability 0.732 at residue 24. | Conserved hypothetical protein; COGs COG3182. | 0.406 |
NE1095 | NE1096 | Possible TonB-dependent receptor; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.980) with cleavage site probability 0.732 at residue 24. | Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | 0.948 |
NE1095 | NE1097 | Possible TonB-dependent receptor; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.980) with cleavage site probability 0.732 at residue 24. | TonB-dependent receptor protein. | 0.639 |
NE1095 | NE1098 | Possible TonB-dependent receptor; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.980) with cleavage site probability 0.732 at residue 24. | Putative transmembrane sensor. | 0.475 |
NE1095 | NE1099 | Possible TonB-dependent receptor; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.980) with cleavage site probability 0.732 at residue 24. | Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | 0.849 |
NE1096 | NE1095 | Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | Possible TonB-dependent receptor; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.980) with cleavage site probability 0.732 at residue 24. | 0.948 |
NE1096 | NE1097 | Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | TonB-dependent receptor protein. | 0.607 |
NE1096 | NE1098 | Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | Putative transmembrane sensor. | 0.862 |
NE1096 | NE1099 | Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | 0.402 |
NE1096 | NE1102 | Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | Putative transmembrane sensor. | 0.843 |
NE1097 | NE0354 | TonB-dependent receptor protein. | Possible TonB protein. | 0.549 |
NE1097 | NE0550 | TonB-dependent receptor protein. | Conserved hypothetical protein; COGs COG3182. | 0.465 |
NE1097 | NE1083 | TonB-dependent receptor protein. | Hypothetical protein. | 0.796 |
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