STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ptgs1Putative cyclooxygenase-2. (533 aa)    
Predicted Functional Partners:
ALOX5
Lipoxygenase.
 
 
 0.994
NE1241
Tyrosinase.
 
    0.885
NE0187
Hypothetical protein.
 
 
 0.813
Heph,sla
Multicopper oxidase type 1.
  
     0.758
rkpA
Similar to (AF285636) putative type I polyketide synthase WcbR [Burkholderia mallei], evalue=0.00e+00, 41% identity.
 
  
 0.636
NE1059
Putative urea transporter.
  
    0.630
NE1444
TPR repeat.
 
  
 0.628
NE1238
Putative oxygenase.
 
    0.597
Rh50
Ammonium transporter family.
  
    0.574
NE1244
Hypothetical protein.
 
    0.544
Your Current Organism:
Nitrosomonas europaea
NCBI taxonomy Id: 228410
Other names: N. europaea ATCC 19718, Nitrosomonas europaea ATCC 19718, Nitrosomonas europaea str. ATCC 19718
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