Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NE1250 | NE1397 | NE1250 | NE1397 | Transposase; This is the remnant of a transposon. | Methyl-accepting chemotaxis protein; Dead gene due to framehsift; the other part of the gene is NE1395. | 0.998 |
| NE1250 | NE1700 | NE1250 | NE1700 | Transposase; This is the remnant of a transposon. | Diguanylate cyclase/phosphodiesterase domain 2 (EAL). | 0.986 |
| NE1250 | cheA | NE1250 | NE1866 | Transposase; This is the remnant of a transposon. | Similar to (NC_003296) PROBABLE CHEMOTAXIS SENSOR HISTIDINE KINASE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] evalue=0.00e+00, 51% identity. | 0.713 |
| NE1250 | cheB | NE1250 | NE1859 | Transposase; This is the remnant of a transposon. | CheB methylesterase:Response regulator receiver domain; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.998 |
| NE1250 | cheR | NE1250 | NE1861 | Transposase; This is the remnant of a transposon. | CheR-type MCP methyl-transferase:Generic methyl-transferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.972 |
| NE1250 | cheW | NE1250 | NE1865 | Transposase; This is the remnant of a transposon. | CheW-like domain. | 0.998 |
| NE1250 | pilG | NE1250 | NE1836 | Transposase; This is the remnant of a transposon. | Response regulator receiver domain. | 0.968 |
| NE1250 | pilH | NE1250 | NE1007 | Transposase; This is the remnant of a transposon. | Response regulator receiver domain. | 0.970 |
| NE1250 | pilI | NE1250 | NE1006 | Transposase; This is the remnant of a transposon. | CheW-like domain. | 0.999 |
| NE1250 | pilJ | NE1250 | NE1251 | Transposase; This is the remnant of a transposon. | Bacterial chemotaxis sensory transducer. | 0.999 |
| NE1397 | NE1250 | NE1397 | NE1250 | Methyl-accepting chemotaxis protein; Dead gene due to framehsift; the other part of the gene is NE1395. | Transposase; This is the remnant of a transposon. | 0.998 |
| NE1397 | NE1700 | NE1397 | NE1700 | Methyl-accepting chemotaxis protein; Dead gene due to framehsift; the other part of the gene is NE1395. | Diguanylate cyclase/phosphodiesterase domain 2 (EAL). | 0.812 |
| NE1397 | cheA | NE1397 | NE1866 | Methyl-accepting chemotaxis protein; Dead gene due to framehsift; the other part of the gene is NE1395. | Similar to (NC_003296) PROBABLE CHEMOTAXIS SENSOR HISTIDINE KINASE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] evalue=0.00e+00, 51% identity. | 0.988 |
| NE1397 | cheB | NE1397 | NE1859 | Methyl-accepting chemotaxis protein; Dead gene due to framehsift; the other part of the gene is NE1395. | CheB methylesterase:Response regulator receiver domain; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.980 |
| NE1397 | cheR | NE1397 | NE1861 | Methyl-accepting chemotaxis protein; Dead gene due to framehsift; the other part of the gene is NE1395. | CheR-type MCP methyl-transferase:Generic methyl-transferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.732 |
| NE1397 | cheW | NE1397 | NE1865 | Methyl-accepting chemotaxis protein; Dead gene due to framehsift; the other part of the gene is NE1395. | CheW-like domain. | 0.914 |
| NE1397 | pilH | NE1397 | NE1007 | Methyl-accepting chemotaxis protein; Dead gene due to framehsift; the other part of the gene is NE1395. | Response regulator receiver domain. | 0.478 |
| NE1397 | pilJ | NE1397 | NE1251 | Methyl-accepting chemotaxis protein; Dead gene due to framehsift; the other part of the gene is NE1395. | Bacterial chemotaxis sensory transducer. | 0.865 |
| NE1700 | NE1250 | NE1700 | NE1250 | Diguanylate cyclase/phosphodiesterase domain 2 (EAL). | Transposase; This is the remnant of a transposon. | 0.986 |
| NE1700 | NE1397 | NE1700 | NE1397 | Diguanylate cyclase/phosphodiesterase domain 2 (EAL). | Methyl-accepting chemotaxis protein; Dead gene due to framehsift; the other part of the gene is NE1395. | 0.812 |
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