STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NE2111Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (85 aa)    
Predicted Functional Partners:
NE2112
PIN (PilT N terminus) domain.
 
     0.930
vapC-3
PIN (PilT N terminus) domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
     0.578
NE2121
Phosphoribosyl transferase; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.858) with cleavage site probability 0.428 at residue 33.
  
     0.484
NE1067
Putative plasmid stability-like protein.
 
     0.429
NE2110
Bacterial regulatory proteins, AsnC family.
 
    0.404
Your Current Organism:
Nitrosomonas europaea
NCBI taxonomy Id: 228410
Other names: N. europaea ATCC 19718, Nitrosomonas europaea ATCC 19718, Nitrosomonas europaea str. ATCC 19718
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.