STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NE2245Conserved hypothetical protein. (257 aa)    
Predicted Functional Partners:
NE2242
DUF214.
 
 0.901
NE2240
DUF214.
 
 
 
 0.887
NE2243
Hypothetical protein.
 
     0.872
NE2244
ATPase component ABC-type (unclassified) transport system.
 
 
 0.813
NE2246
Hypothetical protein.
 
    0.667
amiB
Cell wall hydrolase/autolysin.
   
   0.638
NE1444
TPR repeat.
 
 
 
 0.629
NE0049
Sensory transduction histidine kinases.
 
 
 
 0.566
macB
Probable ATP-binding/permease fusion ABC transporter; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
   
 
 0.564
NE1057
DUF214.
   
 
 0.561
Your Current Organism:
Nitrosomonas europaea
NCBI taxonomy Id: 228410
Other names: N. europaea ATCC 19718, Nitrosomonas europaea ATCC 19718, Nitrosomonas europaea str. ATCC 19718
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