STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEQ464NEQ464; RIO1-like serine/threonine protein kinase [Methanopyrus kandleri]; COG0478: Predicted serine/threonine protein kinases; IPR000687: RIO1/ZK632.3/MJ0444 family; IPR001245: Tyrosine kinase catalytic domain; IPR000719: Eukaryotic protein kinase; IPR001472: Bipartite nuclear localization signal. (280 aa)    
Predicted Functional Partners:
rps11
NEQ069; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
    
 0.999
rps6e
NEQ105; Ribosomal protein S6E [Methanopyrus kandeleri]; COG2125: Ribosomal protein S6E (S10); IPR001377: Ribosomal protein S6e; IPR001472: Bipartite nuclear localization signal; Belongs to the eukaryotic ribosomal protein eS6 family.
    
  0.999
NEQ212
NEQ212; Ribosomal protein 15A isolog [Pyrococcus furiosus]; COG1439: Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module; IPR002851: Protein of unknown function DUF133.
   
 0.999
rps4
NEQ247; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
  0.999
rps5
NEQ388; With S4 and S12 plays an important role in translational accuracy.
   
 0.999
rps19
NEQ480; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 0.999
rps3
NEQ481; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
 0.999
NEQ031
NEQ031; Predicted RNA binding protein; COG1094: Predicted RNA-binding protein (contains KH domains); IPR001472: Bipartite nuclear localization signal.
   
 
 0.987
NEQ460
NEQ460; Predicted serine/threonine protein kinase [Methanopyrus kandleri]; COG1718: Predicted serine/threonine protein kinases; IPR000687: RIO1/ZK632.3/MJ0444 family; IPR001245: Tyrosine kinase catalytic domain; IPR000719: Eukaryotic protein kinase.
  
 
0.968
rps19e
NEQ187; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
    
 0.964
Your Current Organism:
Nanoarchaeum equitans
NCBI taxonomy Id: 228908
Other names: Microarchaeum sp. Kin4-M, N. equitans Kin4-M, Nanoarchaeum equitans Kin4-M, Nanoarchaeum equitans str. Kin4-M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.