STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps8eNEQ469; SSU ribosomal protein S8E [Archaeoglobus fulgidus]; COG2007: Ribosomal protein S8E; IPR001047: Ribosomal protein S8E; IPR001472: Bipartite nuclear localization signal. (127 aa)    
Predicted Functional Partners:
rpl23
NEQ065; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.
   
 
 0.999
rpl10
NEQ091; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.999
NEQ157
NEQ157; GTP-binding protein [Pyrococcus horikoshii]; COG1084: Predicted GTPase; IPR000765: GTP1/OBG family; IPR001687: ATP/GTP-binding site motif A (P-loop).
   
 
 0.999
rpl24
NEQ257; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
 
 0.999
rpl30
NEQ311; LSU ribosomal protein L30P [Methanococcus jannaschii]; COG1841: Ribosomal protein L30/L7E; IPR000517: Ribosomal protein L30.
   
 
 0.999
rpl7ae
NEQ319; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
   
 
 0.999
NEQ446
NEQ446; SSU ribosomal protein S9P [Pyrococcus furiosus]; COG0103: Ribosomal protein S9; IPR000754: Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.999
rpl22
NEQ204; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
   
 
 0.997
NEQ364
NEQ364; LSU ribosomal protein L31E [Methanococcus jannaschii]; COG2097: Ribosomal protein L31E; IPR000054: Ribosomal protein L31e.
   
 
 0.997
rpl3
NEQ433; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.994
Your Current Organism:
Nanoarchaeum equitans
NCBI taxonomy Id: 228908
Other names: Microarchaeum sp. Kin4-M, N. equitans Kin4-M, Nanoarchaeum equitans Kin4-M, Nanoarchaeum equitans str. Kin4-M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.