STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEQ80_02295Unannotated protein. (286 aa)    
Predicted Functional Partners:
GCA_001050195_00979
Unannotated protein.
  
  
 0.842
DEQ80_02290
Unannotated protein.
       0.792
DEQ80_09855
Unannotated protein.
  
  
 0.596
DEQ80_02300
Unannotated protein.
       0.497
DEQ80_07585
Unannotated protein.
  
    0.471
GCA_001050195_00982
Unannotated protein.
  
    0.456
cpaB
Unannotated protein.
  
    0.456
GCA_001050195_02318
Unannotated protein.
  
    0.456
DEQ80_02080
Unannotated protein.
   
    0.436
DEQ80_04880
Unannotated protein.
  
    0.432
Your Current Organism:
Anaerolinea thermolimosa
NCBI taxonomy Id: 229919
Other names: A. thermolimosa, Anaerolinea thermolimosa Yamada et al. 2006, DSM 16554, JCM 12577, anaerobic filamentous bacterium IMO-1, strain IMO-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.