STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ajs_0174PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_0486 protein of unknown function DUF6, transmembrane. (313 aa)    
Predicted Functional Partners:
Ajs_0173
PFAM: glutathione peroxidase; KEGG: rfr:Rfer_0484 glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.801
Ajs_0293
KEGG: pol:Bpro_0295 hypothetical protein.
  
     0.644
Ajs_1767
KEGG: pol:Bpro_2315 putative transmembrane protein.
  
     0.583
Ajs_0175
PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 major facilitator superfamily MFS_1.
       0.566
Ajs_3357
KEGG: rfr:Rfer_1400 hypothetical protein.
  
     0.565
Ajs_0670
PFAM: General secretion pathway L; KEGG: pol:Bpro_1326 hypothetical protein.
  
     0.480
Ajs_0711
PFAM: ResB family protein; KEGG: pol:Bpro_0773 ResB-like.
  
     0.460
Ajs_0672
Conserved hypothetical protein; KEGG: rfr:Rfer_0537 methylation.
  
     0.442
Ajs_3508
PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like).
  
   
 0.437
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.434
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.