STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ajs_1465KEGG: ppu:PP_5390 hypothetical protein. (94 aa)    
Predicted Functional Partners:
Ajs_1466
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ppu:PP_5389 hypothetical protein.
 
    0.948
Ajs_1464
KEGG: ppu:PP_5391 hypothetical protein.
 
     0.907
Ajs_2713
KEGG: rfr:Rfer_0419 hypothetical protein.
 
    0.783
Ajs_1467
PFAM: Heavy metal transport/detoxification protein; KEGG: mmc:Mmcs_3947 heavy metal transport/detoxification protein.
       0.618
Ajs_1460
Heavy metal sensor signal transduction histidine kinase; Member of a two-component regulatory system.
 
     0.605
Ajs_1470
KEGG: lpp:lpp2348 hypothetical protein.
 
     0.541
Ajs_1463
KEGG: pol:Bpro_3489 hypothetical protein.
       0.490
Ajs_1468
KEGG: ana:asl7591 hypothetical protein.
 
    
0.487
Ajs_1469
KEGG: rfr:Rfer_0418 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein.
       0.479
Ajs_1461
TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tbd:Tbd_1749 two component heavy metal response transcriptional regulator, winged helix family.
 
     0.438
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.