STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ajs_1466PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ppu:PP_5389 hypothetical protein. (222 aa)    
Predicted Functional Partners:
Ajs_1465
KEGG: ppu:PP_5390 hypothetical protein.
 
    0.948
Ajs_1464
KEGG: ppu:PP_5391 hypothetical protein.
 
     0.859
Ajs_1468
KEGG: ana:asl7591 hypothetical protein.
 
    0.840
Ajs_2714
KEGG: pol:Bpro_1175 hypothetical protein.
 
    0.783
Ajs_2711
KEGG: ana:asl7591 hypothetical protein.
 
    0.751
Ajs_1491
KEGG: ana:asl7591 hypothetical protein.
  
     0.719
Ajs_1467
PFAM: Heavy metal transport/detoxification protein; KEGG: mmc:Mmcs_3947 heavy metal transport/detoxification protein.
       0.619
Ajs_1470
KEGG: lpp:lpp2348 hypothetical protein.
 
     0.602
Ajs_1469
KEGG: rfr:Rfer_0418 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein.
      0.494
Ajs_1463
KEGG: pol:Bpro_3489 hypothetical protein.
       0.486
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
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