STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ajs_1531TIGRFAM: Prokaryotic membrane lipoprotein lipid attachment site; KEGG: eba:ebA6618 hypothetical protein. (212 aa)    
Predicted Functional Partners:
Ajs_1530
PFAM: TraU family protein; KEGG: eba:ebA6622 hypothetical protein.
 
   
 0.954
Ajs_1525
PFAM: TraH family protein; KEGG: eba:ebA6635 hypothetical protein.
 
   
 0.950
Ajs_1529
KEGG: dar:Daro_2659 hypothetical protein.
 
   
 0.949
Ajs_1528
KEGG: eba:ebA6625 hypothetical protein.
 
   
 0.948
Ajs_1526
KEGG: eba:ebA6633 hypothetical protein.
 
     0.947
Ajs_1535
KEGG: dar:Daro_2653 hypothetical protein.
 
   
 0.945
Ajs_1538
PFAM: TraB pilus assembly family protein; KEGG: eba:ebA6607 plasmid-like sex pilus assembly protein TraB.
 
     0.945
Ajs_1540
KEGG: eba:ebA6600 plasmid-like conjugative transfer protein TraE.
 
     0.945
Ajs_1533
KEGG: eba:ebA6617 hypothetical protein.
 
     0.939
Ajs_1524
PFAM: TraG domain protein; KEGG: dar:Daro_2331 hypothetical protein.
 
   
 0.938
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.