STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ajs_1993PFAM: dihydrodipicolinate synthetase; KEGG: pfo:Pfl_0827 dihydrodipicolinate synthetase; Belongs to the DapA family. (303 aa)    
Predicted Functional Partners:
Ajs_1990
D-glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_3421 glucarate dehydratase.
 
  
 0.980
Ajs_1996
PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pfo:Pfl_3283 mandelate racemase/muconate lactonizing enzyme.
 
  
 0.977
Ajs_1998
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: pol:Bpro_3104 galactarate dehydratase.
 
  
 0.960
Ajs_1995
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pfo:Pfl_0823 regulatory protein GntR, HTH.
 
   
 0.763
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
  
 0.703
Ajs_2466
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pol:Bpro_1792 chorismate mutase.
  
  
 0.691
gatC
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
  
 0.689
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.622
Ajs_1994
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3101 uncharacterized protein UPF0065.
 
     0.612
Ajs_1991
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rme:Rmet_5274 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
 
   
 0.593
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
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