STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ajs_2714KEGG: pol:Bpro_1175 hypothetical protein. (91 aa)    
Predicted Functional Partners:
Ajs_2713
KEGG: rfr:Rfer_0419 hypothetical protein.
 
    0.948
Ajs_1466
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ppu:PP_5389 hypothetical protein.
 
    0.783
Ajs_2715
KEGG: ppu:PP_5391 hypothetical protein.
       0.774
Ajs_1464
KEGG: ppu:PP_5391 hypothetical protein.
 
     0.663
Ajs_1460
Heavy metal sensor signal transduction histidine kinase; Member of a two-component regulatory system.
 
     0.481
Ajs_2678
PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mes:Meso_3878 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase.
 
     0.460
Ajs_1497
PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mes:Meso_3878 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase.
 
     0.451
Ajs_2726
Heavy metal sensor signal transduction histidine kinase; Member of a two-component regulatory system.
 
     0.439
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.