STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ajs_2905PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: rme:Rmet_1556 TrbL/VirB6 plasmid conjugal transfer protein. (444 aa)    
Predicted Functional Partners:
Ajs_2911
PFAM: type II secretion system protein E; KEGG: rme:Rmet_1341 type II secretion system protein E.
 
   
 0.957
Ajs_2913
PFAM: TRAG family protein; KEGG: rme:Rmet_1548 TraG protein.
 
   
 0.956
Ajs_2912
KEGG: bam:Bamb_2003 CopG domain protein DNA-binding domain protein.
 
     0.954
Ajs_2902
PFAM: conjugation TrbI family protein; KEGG: pau:PA14_30850 TrbI-like protein.
 
   
 0.950
Ajs_2904
PFAM: Conjugal transfer protein; KEGG: rme:Rmet_1557 conjugal transfer protein.
 
   
 0.950
Ajs_2907
KEGG: rme:Rmet_1554 putative conjugal transfer TrbJ signal peptide protein.
 
   
 0.950
Ajs_2909
KEGG: rme:Rmet_1343 putative conjugal transfer TrbD transmembrane protein.
 
   
 0.949
Ajs_2910
PFAM: Conjugal transfer protein TrbC; KEGG: rme:Rmet_1342 conjugal transfer protein TrbC.
 
   
 0.949
Ajs_2908
SMART: AAA ATPase; KEGG: rme:Rmet_1344 ATPase.
 
   
 0.948
Ajs_2903
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pau:PA14_30860 TrbG-like protein.
 
   
 0.947
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.