node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ajs_2313 | Ajs_3345 | Ajs_2313 | Ajs_3345 | KEGG: rfr:Rfer_2106 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like. | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_1413 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | 0.641 |
Ajs_2313 | orn | Ajs_2313 | Ajs_3346 | KEGG: rfr:Rfer_2106 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like. | Exonuclease, RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.675 |
Ajs_2313 | rnc | Ajs_2313 | Ajs_3267 | KEGG: rfr:Rfer_2106 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like. | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.426 |
Ajs_3345 | Ajs_2313 | Ajs_3345 | Ajs_2313 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_1413 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | KEGG: rfr:Rfer_2106 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like. | 0.641 |
Ajs_3345 | dnaQ | Ajs_3345 | Ajs_2138 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_1413 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.429 |
Ajs_3345 | orn | Ajs_3345 | Ajs_3346 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_1413 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | Exonuclease, RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.564 |
Ajs_3345 | rnc | Ajs_3345 | Ajs_3267 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_1413 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.417 |
Ajs_3345 | rsgA | Ajs_3345 | Ajs_3349 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_1413 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.490 |
Ajs_3347 | Ajs_3348 | Ajs_3347 | Ajs_3348 | PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase. | PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rfr:Rfer_1410 transcriptional coactivator/pterin dehydratase. | 0.846 |
Ajs_3347 | orn | Ajs_3347 | Ajs_3346 | PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase. | Exonuclease, RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.717 |
Ajs_3347 | rsgA | Ajs_3347 | Ajs_3349 | PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase. | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.864 |
Ajs_3348 | Ajs_3347 | Ajs_3348 | Ajs_3347 | PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rfr:Rfer_1410 transcriptional coactivator/pterin dehydratase. | PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase. | 0.846 |
Ajs_3348 | orn | Ajs_3348 | Ajs_3346 | PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rfr:Rfer_1410 transcriptional coactivator/pterin dehydratase. | Exonuclease, RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.729 |
Ajs_3348 | rsgA | Ajs_3348 | Ajs_3349 | PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rfr:Rfer_1410 transcriptional coactivator/pterin dehydratase. | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.862 |
cca | orn | Ajs_0505 | Ajs_3346 | Metal dependent phosphohydrolase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | Exonuclease, RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.615 |
cca | polA | Ajs_0505 | Ajs_3317 | Metal dependent phosphohydrolase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.501 |
dnaQ | Ajs_3345 | Ajs_2138 | Ajs_3345 | DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_1413 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | 0.429 |
dnaQ | orn | Ajs_2138 | Ajs_3346 | DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | Exonuclease, RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.543 |
dnaQ | polA | Ajs_2138 | Ajs_3317 | DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.637 |
orn | Ajs_2313 | Ajs_3346 | Ajs_2313 | Exonuclease, RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | KEGG: rfr:Rfer_2106 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like. | 0.675 |