STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssaDType III secretion system apparatus SsaD. (396 aa)    
Predicted Functional Partners:
ssaC
Type III secretion system apparatus SsaC; COG1450 Type II secretory pathway, component PulD.
  
  
 0.940
sucA
COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
    
 
 0.935
invA
COG1450 Type II secretory pathway, component PulD; type III secretion system outer membrane pore InvG.
  
  
 0.918
sseD
Type III secretion system effector SseD.
  
    0.872
sseC
Type III secretion system effector SseC.
  
  
 0.872
sseB
Type III secretion effector SseB; COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
  
 0.867
ssaJ
COG4669 Type III secretory pathway, lipoprotein EscJ.
  
  
 0.861
ssaU
Type III secretion inner membrane protein; COG4792 Type III secretory pathway, component EscU; YscU, SpaS, EscU, HrcU, SsaU, homologous to flagellar export components.
  
  
 0.831
ssaQ
COG1886 Flagellar motor switch/type III secretory pathway protein; YscQ homologous to flagellar export components.
  
 
 0.827
ssaB
Pathogenicity island chaperone protein SpiC.
  
  
 0.808
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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