STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOPEG_1939Aliphatic amidase amiE; COG5464 Uncharacterized conserved protein; putative phage transposase. (272 aa)    
Predicted Functional Partners:
gdhA
COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.939
SOPEG_1701
Aminotransferase; Potential frameshift: common BLAST hit: gi|33600515|ref|NP_888075.1| allantoate amidohydrolase; Allantoate amidohydrolase.
  
 
 0.931
gltD
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
 
 0.929
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
    
 0.925
aspC1
Aminotransferase; COG3203 Outer membrane protein (porin); outer membrane protein F.
     
 0.903
pck
Phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.
    
 0.810
sucA
COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
     
  0.803
gltA
COG0372 Citrate synthase; Belongs to the citrate synthase family.
   
 
  0.800
mqo
Malate:quinone oxidoreductase; COG0579 Predicted dehydrogenase.
     
  0.800
icd
COG2838 Monomeric isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
     
  0.800
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.