STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF73910.1ABC transporter related protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component. (427 aa)    
Predicted Functional Partners:
AHF73909.1
ABC-2 type transporter; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
 0.999
AHF73912.1
COG0438 Glycosyltransferase.
 
 0.940
rbfU
Mannosyltransferase B; COG0438 Glycosyltransferase; glycosyl transferase group 1.
 
 0.925
ubiC
Polysaccharide synthesis-related protein; Target site duplication generated by insertion of ISSoEn2.
  
  
 0.876
cpsG
COG1109 Phosphomannomutase.
  
  
 0.800
cpsB
Mannose-1-phosphate guanylyltransferase; COG4993 Glucose dehydrogenase; Glucose dehydrogenase PQQ-dependent; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.640
kdsD
Arabinose 5-phosphate isomerase; COG0794 Predicted sugar phosphate isomerase involved in capsule formation.
     
 0.491
otsA1
CsbD domain-containing protein; COG0380 Trehalose-6-phosphate synthase; Alpha-trehalose-phosphate synthase [UDP-forming]; Belongs to the UPF0337 (CsbD) family.
  
    0.443
AHF73945.1
COG0582 Integrase.
   
    0.403
xerD
Site-specific tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifical [...]
   
    0.403
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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