STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF73945.1COG0582 Integrase. (329 aa)    
Predicted Functional Partners:
SOPEG_3568
PBSX family phage portal protein; Potential frameshift: common BLAST hit: gi|51596194|ref|YP_070385.1| gpP phage P2 terminase; gpP phage P2 terminase.
  
    0.744
SOPEG_2223
Putative capsid scaffolding protein; COG1961 Site-specific recombinases, DNA invertase Pin homologs; predicted terminase, ATPase subunit.
  
    0.726
AHF73944.1
Hypothetical protein; COG2944 Predicted transcriptional regulator.
  
    0.591
xerC
Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifical [...]
 
 
 
0.589
arcB
Aerobic respiration control sensor protein; COG1242 Predicted Fe-S oxidoreductase; putative Fe-S oxidoreductase.
   
  
 0.575
SOPEG_2225
Phage terminase, endonuclease small subunit M; Potential frameshift: common BLAST hit: gi|291282863|ref|YP_003499681.1| putative major capsid protein; putative major capsid protein.
  
    0.570
SOPEG_3583
COG5283 Phage-related tail protein; phage tail-like protein.
  
    0.556
tyrA
Bifunctional chorismate mutase/prephenate dehydrogenase; COG1605 Chorismate mutase.
  
    0.551
SOPEG_2233
GPW/gp25 family protein; Potential frameshift: common BLAST hit: gi|242241216|ref|YP_002989397.1| phage baseplate assembly protein V; phage baseplate assembly protein V.
  
    0.551
xerD
Site-specific tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifical [...]
  
   
0.537
Your Current Organism:
Sodalis pierantonius
NCBI taxonomy Id: 2342
Other names: C. Sodalis pierantonius str. SOPE, Candidatus Sodalis pierantonius str. SOPE, SOPE, Sitophilus oryzae endosymbiont, Sitophilus oryzae primary endosymbiont, Sitophilus oryzae principal endosymbiont, primary endosymbiont of Sitophilus oryzae
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