STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0493KEGG: aba:Acid345_3000 hypothetical protein. (192 aa)    
Predicted Functional Partners:
Acid_0492
KEGG: aba:Acid345_3001 conserved hypothetical protein, transmembrane prediction.
     0.995
Acid_0490
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aba:Acid345_3003 Fe-S-cluster-containing hydrogenase.
 
 
 0.991
Acid_0497
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.991
Acid_6208
PFAM: cytochrome c, class I; Cytochrome b/b6, N-terminal domain; KEGG: gsu:GSU1649 cytochrome b/b6.
  
 
 0.970
Acid_0499
PFAM: cytochrome c oxidase, subunit III; KEGG: aba:Acid345_2994 cytochrome c oxidase, subunit III.
 
 
 0.961
Acid_0494
KEGG: noc:Noc_1242 hypothetical protein.
 
 
 0.959
Acid_0489
KEGG: aba:Acid345_3004 chaperone protein HtpG.
 
 
   0.958
Acid_0491
PFAM: Polysulphide reductase, NrfD; KEGG: aba:Acid345_3002 polysulphide reductase, NrfD.
 
 
   0.958
Acid_0500
TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: aba:Acid345_2993 Caa(3)-type oxidase, subunit IV.
 
 
 
 0.957
Acid_0496
KEGG: aba:Acid345_2997 electron transport protein SCO1/SenC.
 
  
 0.953
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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