STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1545KEGG: gme:Gmet_1668 putative transmembrane protein. (174 aa)    
Predicted Functional Partners:
Acid_1544
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: aba:Acid345_0936 TonB-dependent receptor.
 
     0.947
Acid_1546
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: aba:Acid345_0938 periplasmic sensor signal transduction histidine kinase.
       0.785
Acid_1056
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug.
 
     0.778
Acid_1547
PFAM: response regulator receiver; KEGG: ava:Ava_4344 response regulator receiver domain protein (CheY).
       0.773
Acid_1548
PFAM: response regulator receiver; KEGG: mag:amb2979 FOG: CheY-like receiver.
       0.737
Acid_1542
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_3570 ABC transporter, ATPase subunit.
       0.636
Acid_1543
KEGG: aba:Acid345_3571 hypothetical protein.
       0.636
Acid_1541
PFAM: regulatory protein, MerR; KEGG: aba:Acid345_0264 transcriptional regulator, MerR family.
       0.567
Acid_1539
KEGG: aba:Acid345_4226 MutT/NUDIX family protein.
       0.471
Acid_1540
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sru:SRU_2227 hypothetical protein.
       0.471
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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