STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1738PFAM: Animal haem peroxidase; KEGG: sma:SAV1774 peroxidase. (599 aa)    
Predicted Functional Partners:
Acid_2120
Alpha-N-arabinofuranosidase; KEGG: afm:Afu6g14620 alpha-L-arabinofuranosidase.
  
     0.588
Acid_6262
KEGG: ath:At2g35150 phosphate-responsive 1 family protein.
  
   0.560
Acid_1739
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: hch:HCH_00808 short-chain alcohol dehydrogenase-like protein.
       0.545
Acid_6395
SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: bpm:BURPS1710b_A2573 hypothetical protein.
  
     0.508
Acid_4122
KEGG: aci:ACIAD2741 hypothetical protein.
   
   0.506
Acid_1740
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: bja:blr5874 D-galactarate dehydratase.
       0.482
Acid_0434
PFAM: glucose-methanol-choline oxidoreductase; KEGG: bba:Bd2646 putative cholesterol oxidase.
  
     0.480
Acid_6424
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: aba:Acid345_0140 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.456
Acid_1856
Serine phosphatase; PFAM: Forkhead-associated protein; GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aba:Acid345_2718 serine phosphatase.
  
  
 0.423
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.