STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1913PFAM: protein of unknown function DUF820; KEGG: aae:aq_037 hypothetical protein. (167 aa)    
Predicted Functional Partners:
Acid_1914
PFAM: beta-ketoacyl synthase; KEGG: aba:Acid345_2370 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.664
Acid_2242
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_2848 xylose isomerase-like TIM barrel.
  
     0.662
Acid_3931
KEGG: ccr:CC0985 hypothetical protein.
  
     0.632
Acid_6741
PFAM: putative esterase; KEGG: xcv:XCV4418 putative secreted protein.
  
     0.591
Acid_7196
KEGG: gvi:glr2033 hypothetical protein.
  
     0.587
Acid_4741
KEGG: bth:BT3180 hypothetical protein.
  
     0.586
Acid_1957
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: aba:Acid345_0920 ASPIC/UnbV.
  
     0.584
Acid_2296
PFAM: amino acid permease-associated region; KEGG: aba:Acid345_1536 amino acid transporter.
  
     0.582
Acid_6585
KEGG: gvi:gll0760 hypothetical protein.
  
     0.561
Acid_3483
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1682 TPR repeat protein.
  
     0.544
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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