STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2001KEGG: eli:ELI_08855 phosphoribosylglycinamide formyltransferase protein. (125 aa)    
Predicted Functional Partners:
Acid_2002
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_3980 serine/threonine protein kinase with TPR repeats.
       0.773
Acid_2003
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_3768 tetratricopeptide repeat protein.
       0.773
Acid_2004
KEGG: aba:Acid345_1065 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase.
       0.746
Acid_2005
KEGG: aba:Acid345_1064 hypothetical protein.
       0.677
Acid_2006
Hypothetical protein.
       0.677
Acid_1785
Diacylglycerol O-acyltransferase; PFAM: protein of unknown function UPF0089; KEGG: aba:Acid345_0357 protein of unknown function UPF0089.
  
     0.601
Acid_5764
KEGG: bja:bsl6676 hypothetical protein.
  
     0.529
Acid_1482
KEGG: sma:SAV5339 hypothetical protein.
  
     0.522
Acid_3773
KEGG: nfa:nfa1610 hypothetical protein.
  
     0.504
Acid_3702
PFAM: DGPFAETKE family protein; KEGG: nfa:nfa13230 hypothetical protein.
  
     0.485
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.