STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2440PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aba:Acid345_2645 alcohol dehydrogenase, zinc-binding. (342 aa)    
Predicted Functional Partners:
Acid_2441
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: bur:Bcep18194_B0557 isoprenylcysteine carboxyl methyltransferase.
       0.773
Acid_0743
3-oxoacyl-[acyl-carrier-protein] synthase II; PFAM: beta-ketoacyl synthase; KEGG: rru:Rru_A0045 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
  
 0.632
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
 
 
 0.576
Acid_1973
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; 4'-phosphopantetheinyl transferase; KEGG: gvi:gll4225 probable glycolipid synthase.
 
 
 0.536
Acid_2439
PFAM: beta-lactamase domain protein; KEGG: aba:Acid345_4326 beta-lactamase-like.
  
    0.500
Acid_2438
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: aba:Acid345_2952 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.498
Acid_1558
PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: ana:all4458 probable dehydrogenase.
 
  
 0.493
Acid_0592
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aba:Acid345_1337 thioredoxin reductase.
 
   
 0.446
Acid_3077
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_0465 beta-ketoacyl synthase.
  
 
 0.409
Acid_3547
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  
 0.409
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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