STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2490PFAM: beta-lactamase; KEGG: vfi:VF0968 beta-lactamase family protein. (562 aa)    
Predicted Functional Partners:
Acid_4481
PFAM: beta-lactamase; KEGG: syd:Syncc9605_1905 beta-lactamase class C and other penicillin binding proteins.
 
     0.773
Acid_6751
PFAM: beta-lactamase; KEGG: mma:MM3198 hypothetical protein.
  
     0.695
Acid_2491
PFAM: transcriptional regulator PadR family protein; KEGG: aba:Acid345_0617 transcriptional regulator, PadR-like family.
       0.545
Acid_2492
PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_4627 ABC efflux pump, inner membrane subunit.
       0.518
Acid_1992
PFAM: beta-lactamase; KEGG: sru:SRU_0951 beta-lactamase, putative.
  
     0.430
Acid_3631
PFAM: beta-lactamase; Uncharacterised conserved protein UCP016719; KEGG: aba:Acid345_2615 uncharacterised conserved protein UCP016719.
 
   
0.423
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.