STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2819KEGG: xcb:XC_1522 hypothetical protein. (257 aa)    
Predicted Functional Partners:
Acid_2818
Hypothetical protein.
       0.773
Acid_2820
Alpha-galactosidase; PFAM: glycoside hydrolase, clan GH-D; KEGG: aba:Acid345_1677 alpha-galactosidase.
       0.618
Acid_2817
Hypothetical protein.
       0.539
Acid_2821
Hypothetical protein.
       0.418
Acid_2816
PFAM: glycoside hydrolase, family 16; glycoside hydrolase, family 10; KEGG: sde:Sde_0323 TonB-like.
       0.413
Acid_2822
PFAM: NIPSNAP family containing protein; KEGG: rba:RB7235 hypothetical protein-signal peptide prediction.
       0.406
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.