STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2983PFAM: glycoside hydrolase, family 28; KEGG: ccr:CC0572 hypothetical protein. (731 aa)    
Predicted Functional Partners:
Acid_1249
PFAM: Pectinesterase; KEGG: bth:BT4109 putative pectinesterase precursor.
 
   
 0.787
Acid_7771
PFAM: Pectinesterase; KEGG: bja:blr1994 probable pectinesterase.
 
   
 0.786
Acid_4052
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bth:BT4150 putative rhamnogalacturonan acetylesterase.
  
   0.783
Acid_5759
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rba:RB3639 hypothetical protein.
  
   0.783
Acid_1098
TIGRFAM: pectate lyase; PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bth:BT2254 putative pectate lyase.
  
   0.779
Acid_2982
KEGG: aba:Acid345_0933 Cna B-type protein.
       0.768
Acid_7480
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bth:BT4173 putative rhamnogalacturonan acetylesterase.
  
   0.764
Acid_0267
KEGG: afm:Afu8g07270 hypothetical protein.
  
     0.635
uxaC
PFAM: Glucuronate isomerase; KEGG: bth:BT0823 uronate isomerase.
 
   
 0.525
Acid_2981
KEGG: aba:Acid345_1711 hypothetical protein.
       0.507
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.