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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3205PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: pol:Bpro_1506 FAD linked oxidase-like. (452 aa)    
Predicted Functional Partners:
Acid_5018
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: dps:DP2209 probable NADH dehydrogenase (ubiquinone) I, chain F.
   
   0.657
Acid_3206
KEGG: gsu:GSU2816 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
 
 0.629
Acid_1310
TIGRFAM: 4-hydroxybenzoate polyprenyltransferase, putative; PFAM: UbiA prenyltransferase; KEGG: aba:Acid345_3612 4-hydroxybenzoate polyprenyltransferase, putative; Belongs to the UbiA prenyltransferase family.
    
 0.525
Acid_3204
Hypothetical protein; KEGG: aba:Acid345_3021 glycosyl hydrolase, BNR repeat.
       0.493
Acid_3867
KEGG: mma:MM0186 hypothetical protein.
  
     0.475
Acid_0874
Hypothetical protein; KEGG: gme:Gmet_3488 K+ channel, pore region.
  
    0.442
Acid_3816
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: aba:Acid345_3680 glutamate synthase (ferredoxin).
     
 0.442
Acid_6264
KEGG: mma:MM0186 hypothetical protein.
  
     0.410
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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