STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3278KEGG: gvi:gll4248 hypothetical protein. (264 aa)    
Predicted Functional Partners:
Acid_5044
Hypothetical protein; KEGG: gvi:gll4200 similar to cell surface glycoprotein (s-layer protein) related protein.
  
     0.775
Acid_5634
PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: gvi:gll4200 similar to cell surface glycoprotein (s-layer protein) related protein.
 
     0.768
Acid_5189
Hypothetical protein; KEGG: gvi:gll4200 similar to cell surface glycoprotein (s-layer protein) related protein.
  
     0.680
Acid_3360
PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: gvi:gll4200 similar to cell surface glycoprotein (s-layer protein) related protein.
  
     0.657
Acid_5535
KEGG: aba:Acid345_4447 hypothetical protein.
  
     0.616
Acid_3279
PFAM: TonB-dependent receptor; KEGG: aba:Acid345_0395 hypothetical protein.
 
     0.509
Acid_0030
PFAM: UvrD/REP helicase; KEGG: sru:SRU_1806 probable ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
  
    0.492
Acid_5078
KEGG: aba:Acid345_4447 hypothetical protein.
  
     0.435
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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