STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4057PFAM: glycoside hydrolase, family 28; SMART: Parallel beta-helix repeat; KEGG: bth:BT4149 exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family. (436 aa)    
Predicted Functional Partners:
Acid_5759
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rba:RB3639 hypothetical protein.
 
   0.958
Acid_7771
PFAM: Pectinesterase; KEGG: bja:blr1994 probable pectinesterase.
  
 0.905
Acid_4052
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bth:BT4150 putative rhamnogalacturonan acetylesterase.
 
   0.822
Acid_1098
TIGRFAM: pectate lyase; PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bth:BT2254 putative pectate lyase.
 
   0.804
Acid_0267
KEGG: afm:Afu8g07270 hypothetical protein.
 
     0.801
Acid_1249
PFAM: Pectinesterase; KEGG: bth:BT4109 putative pectinesterase precursor.
   
 0.800
Acid_7480
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bth:BT4173 putative rhamnogalacturonan acetylesterase.
 
   0.791
Acid_4058
KEGG: aba:Acid345_4386 hypothetical protein.
       0.773
Acid_5953
KEGG: bth:BT4172 hypothetical protein.
  
   
 0.617
Acid_2993
PFAM: glycoside hydrolase, family 43; KEGG: bfs:BF0575 putative glycosyl hydrolase/xylanase.
    0.559
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.