STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4229KEGG: ret:RHE_PE00271 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Acid_4230
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: reu:Reut_A0385 FAD-dependent pyridine nucleotide-disulphide oxidoreductase:pyridine nucleotide-disulphide oxidoreductase dimerisation region.
 
     0.928
Acid_4227
Hypothetical protein.
       0.610
Acid_4228
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_0705 hypothetical protein.
       0.610
Acid_1575
KEGG: aba:Acid345_0317 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.559
Acid_1448
Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)-like protein; KEGG: ade:Adeh_2312 hypothetical protein.
  
     0.540
Acid_4231
Cytochrome c-type biogenesis protein, CcmE-like protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
       0.465
Acid_4232
PFAM: cytochrome c assembly protein; KEGG: aba:Acid345_3207 cytochrome c assembly protein.
       0.451
Acid_4233
Hypothetical protein; Possible subunit of a heme lyase.
       0.451
Acid_4234
KEGG: aba:Acid345_3205 hypothetical protein.
       0.448
Acid_4235
KEGG: aba:Acid345_3204 hypothetical protein.
       0.448
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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