STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5700PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_04499 long-chain acyl-CoA synthetases (AMP-forming). (554 aa)    
Predicted Functional Partners:
Acid_1327
PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV377 putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase.
 
 
0.934
Acid_7444
PFAM: AMP-dependent synthetase and ligase; KEGG: ade:Adeh_0925 AMP-dependent synthetase and ligase.
  
  
 
0.926
Acid_1787
PFAM: PGAP1 family protein; KEGG: aba:Acid345_0349 hypothetical protein.
  
 
 0.901
Acid_5699
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: aba:Acid345_3700 electron transfer flavoprotein, alpha subunit.
  
    0.769
Acid_5698
PFAM: electron transfer flavoprotein beta-subunit; KEGG: aba:Acid345_3697 electron transfer flavoprotein beta-subunit.
       0.766
Acid_5696
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: aba:Acid345_2469 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
 
 0.733
rplE
LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.703
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
 
 
 0.606
Acid_4810
PFAM: short-chain dehydrogenase/reductase SDR; MaoC domain protein dehydratase; KEGG: pfo:Pfl_0654 MaoC-like dehydratase.
  
 
 0.599
Acid_5697
PFAM: regulatory protein, TetR; KEGG: rpa:RPA3300 possible transcriptional regulator, TetR family.
 
     0.578
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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