STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6177PFAM: inner-membrane translocator; KEGG: oih:OB2573 ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (319 aa)    
Predicted Functional Partners:
Acid_6176
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV3018 D-ribose transport system ATP-binding protein.
 0.999
Acid_6178
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20671 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor.
 0.997
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.991
Acid_5935
PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory proteins, IclR; KEGG: jan:Jann_3094 periplasmic binding protein/LacI transcriptional regulator.
 
 0.977
Acid_4422
Gluconolactonase; PFAM: Strictosidine synthase; SMP-30/Gluconolaconase/LRE domain protein; KEGG: pae:PA1293 hypothetical protein.
      0.900
Acid_7826
Inner-membrane translocator; PFAM: periplasmic binding protein/LacI transcriptional regulator; inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.815
Acid_6112
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr6152 ABC transporter ATP-binding protein.
 
     0.743
Acid_6662
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0201 Transcriptional regulator.
 
  
 0.587
Acid_3044
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: aba:Acid345_0329 transcriptional regulator, LacI family.
 
  
 0.555
Acid_0468
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tma:TM1200 transcriptional regulator, LacI family.
 
  
 0.550
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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