STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6178PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20671 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor. (323 aa)    
Predicted Functional Partners:
Acid_6176
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV3018 D-ribose transport system ATP-binding protein.
 0.998
Acid_6177
PFAM: inner-membrane translocator; KEGG: oih:OB2573 ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 0.997
Acid_5935
PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory proteins, IclR; KEGG: jan:Jann_3094 periplasmic binding protein/LacI transcriptional regulator.
  
  
  0.966
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.962
Acid_7825
PFAM: inner-membrane translocator; KEGG: dge:Dgeo_2459 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.948
Acid_7826
Inner-membrane translocator; PFAM: periplasmic binding protein/LacI transcriptional regulator; inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.944
Acid_4291
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: syf:Synpcc7942_1816 periplasmic sensor hybrid histidine kinase.
  
 
 0.925
Acid_2794
KEGG: fra:Francci3_4180 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.917
Acid_2165
TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pca:Pcar_3082 sensor histidine kinase.
 
  
 
 0.914
Acid_5478
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_3382 heavy metal sensor signal transduction histidine kinase.
 
  
 
 0.914
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.