STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6999KEGG: rpa:RPA1595 hypothetical protein. (274 aa)    
Predicted Functional Partners:
Acid_5307
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; catalytic domain of components of various dehydrogenase complexes; Transketolase, central region; KEGG: sru:SRU_1173 2-oxoglutarate dehydrogenase, E1 component.
    
 
 0.907
Acid_1618
KEGG: dar:Daro_2941 hypothetical protein.
 
 
 
 0.699
Acid_7000
Hypothetical protein.
       0.658
Acid_2577
KEGG: ana:alr3806 unknown protein.
 
     0.589
Acid_3816
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: aba:Acid345_3680 glutamate synthase (ferredoxin).
    
   0.570
Acid_7001
PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_4627 ABC efflux pump, inner membrane subunit.
       0.546
Acid_0914
Dihydrolipoyllysine-residue succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: aba:Acid345_4350 dihydrolipoamide S-succinyltransferase.
    
 
 0.515
Acid_1592
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:gll1889 hypothetical protein.
  
   0.498
Acid_6997
ErfK/YbiS/YcfS/YnhG; KEGG: gme:Gmet_2505 ErfK/YbiS/YcfS/YnhG.
 
     0.491
Acid_7848
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:gll2226 hypothetical protein.
  
   0.465
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.