STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7488PFAM: PepSY-associated TM helix domain protein; KEGG: dra:DR1792 hypothetical protein. (215 aa)    
Predicted Functional Partners:
Acid_5642
PFAM: ApbE family lipoprotein; KEGG: dra:DR1794 nosX protein, putative.
 
   
 0.790
Acid_7487
PFAM: protein of unknown function UPF0153; KEGG: bba:Bd0554 hypothetical protein.
 
     0.592
Acid_1243
PFAM: protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB12024 hypothetical protein-signal peptide and transmembrane prediction.
  
    0.574
Acid_5711
Hypothetical protein; KEGG: rba:RB5247 putative WD-repeat containing protein.
  
     0.564
Acid_6881
PFAM: Ig family protein; SMART: PKD domain containing protein; KEGG: xcb:XC_4290 hemagglutinin.
  
     0.543
Acid_4685
PFAM: Ig family protein; SMART: PKD domain containing protein; Dystroglycan-type cadherin domain protein; KEGG: mmu:239611 mucin 19.
  
     0.504
Acid_5770
PFAM: Ig family protein; KEGG: rso:RSc0115 putative hemagglutinin-related protein.
  
     0.490
Acid_6164
Ig family protein; PFAM: PKD domain containing protein; Ig family protein; KEGG: mmu:239611 mucin 19.
  
     0.484
Acid_7485
PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: gsu:GSU3000 CbiX protein.
       0.461
Acid_1244
PFAM: protein of unknown function DUF1552; KEGG: rba:RB12022 hypothetical protein.
  
     0.460
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.