STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7662PFAM: aminotransferase class-III; KEGG: ath:At3g08860 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (436 aa)    
Predicted Functional Partners:
Acid_7663
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gka:GK1420 beta-alanine synthase.
 
 
 0.985
Acid_0680
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: tfu:Tfu_0687 methylmalonate-semialdehyde dehydrogenase.
 
 0.936
Acid_1786
PFAM: aldehyde dehydrogenase; KEGG: sco:SCO4780 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.924
Acid_5088
PFAM: aldehyde dehydrogenase; KEGG: noc:Noc_1710 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.924
Acid_6538
PFAM: aldehyde dehydrogenase; KEGG: aba:Acid345_0377 succinate-semialdehyde dehydrogenase (NAD(P)+).
 
 0.924
Acid_6729
PFAM: aldehyde dehydrogenase; KEGG: aba:Acid345_1381 aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
 
 0.924
Acid_2435
PFAM: aminotransferase class-III; KEGG: aba:Acid345_3989 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.913
Acid_7941
PFAM: aminotransferase, class V; Pyridoxal-dependent decarboxylase; KEGG: aba:Acid345_0934 pyridoxal-dependent decarboxylase.
 
 
 0.898
Acid_7659
Dihydropyrimidinase; KEGG: sco:SCO6415 putative D-hydantoinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3.
 
  
 0.885
Acid_7660
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA; KEGG: gka:GK1422 dihydropyrimidine dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
  
 0.864
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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