STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
furFerric uptake regulation protein; Belongs to the Fur family. (153 aa)    
Predicted Functional Partners:
rpoB
DNA-dependent RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.925
fur-2
Transcriptional regulator; FurR family; Belongs to the Fur family.
  
     0.721
rpoA
DNA-dependent RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.626
tsaA
Alkyl hydroperoxide reductase TsaA.
  
  
 0.611
HH_0891
Conserved hypothetical protein; Similar to Helicobacter pylori JHP0546; predicted methyl-accepting chemotaxis protein (MCP).
       0.576
HH_0892
Hypothetical protein.
       0.554
HH_0561
Conserved hypothetical protein; Similar to Campylobacter jejuni CJ0829c.
  
    0.540
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.537
pbpA
Penicillin-binding protein.
       0.530
fecE
ABC transporter; ATP-binding protein.
  
  
 0.434
Your Current Organism:
Helicobacter hepaticus
NCBI taxonomy Id: 235279
Other names: H. hepaticus ATCC 51449, Helicobacter hepaticus ATCC 51449, Helicobacter hepaticus str. ATCC 51449
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