Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GK0363 | GK0570 | GK0363 | GK0570 | Phosphomannomutase. | Phosphomannomutase. | 0.902 |
GK0363 | GK3297 | GK0363 | GK3297 | Phosphomannomutase. | Phosphomannomutase. | 0.902 |
GK0363 | deoB | GK0363 | GK2314 | Phosphomannomutase. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.910 |
GK0363 | pdxS | GK0363 | GK0011 | Phosphomannomutase. | Superoxide-inducible protein (protein required for pyridoxine synthesis); Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.800 |
GK0363 | pdxT | GK0363 | GK0012 | Phosphomannomutase. | 2-deoxy-scyllo-inosose synthase20kDa subunit; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.800 |
GK0363 | prs | GK0363 | GK0044 | Phosphomannomutase. | Ribose-phosphate pyrophosphokinase (phosphoribosyl pyrophosphate synthetase); Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.925 |
GK0363 | rbsK | GK0363 | GK3230 | Phosphomannomutase. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.906 |
GK0363 | tal | GK0363 | GK3385 | Phosphomannomutase. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. | 0.826 |
GK0363 | tkt | GK0363 | GK1332 | Phosphomannomutase. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.921 |
GK0570 | GK0363 | GK0570 | GK0363 | Phosphomannomutase. | Phosphomannomutase. | 0.902 |
GK0570 | GK3297 | GK0570 | GK3297 | Phosphomannomutase. | Phosphomannomutase. | 0.901 |
GK0570 | deoB | GK0570 | GK2314 | Phosphomannomutase. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.914 |
GK0570 | pdxS | GK0570 | GK0011 | Phosphomannomutase. | Superoxide-inducible protein (protein required for pyridoxine synthesis); Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.800 |
GK0570 | pdxT | GK0570 | GK0012 | Phosphomannomutase. | 2-deoxy-scyllo-inosose synthase20kDa subunit; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.800 |
GK0570 | prs | GK0570 | GK0044 | Phosphomannomutase. | Ribose-phosphate pyrophosphokinase (phosphoribosyl pyrophosphate synthetase); Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.927 |
GK0570 | rbsK | GK0570 | GK3230 | Phosphomannomutase. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.909 |
GK0570 | tal | GK0570 | GK3385 | Phosphomannomutase. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. | 0.826 |
GK0570 | tkt | GK0570 | GK1332 | Phosphomannomutase. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.921 |
GK3297 | GK0363 | GK3297 | GK0363 | Phosphomannomutase. | Phosphomannomutase. | 0.902 |
GK3297 | GK0570 | GK3297 | GK0570 | Phosphomannomutase. | Phosphomannomutase. | 0.901 |
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